FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences216645748
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTCAC6692202330.89006990342594No Hit
TGGTGTTT5497043225.373418360373268No Hit
GATCAGCA5363319724.75617338217965No Hit
ACAACAGG3844184517.744103152211416No Hit
ACAACAGA5923710.27342839888092335No Hit
TGGTGTTA5555550.25643475818413014No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)