FastQCFastQC Report
Fri 10 May 2024
EGAF00005396692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences135295742
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGCTCG4072451130.100364134149913No Hit
CTCCTCTA3625393826.796067240608355No Hit
TGGTAAAC2901433121.445117615009643No Hit
GAAAGGGT2808378120.757328046584053No Hit
GAAAGGGA1373690.10153238968895267No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)