FastQCFastQC Report
Wed 1 May 2024
EGAF00005396693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences226043548
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA6069381526.85049652467851No Hit
GGGCTCTC6065273626.832323477775176No Hit
CATTAGCG5136363722.72289452827028No Hit
ACAAGAAT5127915122.68551854441782No Hit
GGGCTCTA2878910.12736085703273425No Hit
TTCGCTAA2308710.10213562919300842No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)