FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109880725
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTCCT3404939830.987598598389297No Hit
GTTGCAGC3036764127.63691357151129No Hit
CAATGGAG2202614720.045505706301082No Hit
TGGAATTA1995688318.162314637075795No Hit
CAAGGGAG12875221.1717450899600454No Hit
CACTGGAG5570170.5069287629836807No Hit
CCATGGAG5465280.497382957748049No Hit
ACCCTCCA2179510.19835234978655267No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)