FastQCFastQC Report
Wed 1 May 2024
EGAF00005396699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences214259414
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTGAT7487689534.94684018878162No Hit
GAGCAAGA6332478329.55519284674231No Hit
ATATCCCG5178568724.16962038363458No Hit
CGCAGTTC2190516110.223663264569556No Hit
ATATCCCA4831230.22548507483549823No Hit
CGCAGTTA2649650.12366551137865055No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)