FastQCFastQC Report
Fri 10 May 2024
EGAF00005396710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121056809
Total Bases968.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTGGCG3453773128.53018453509707No Hit
TTGGCATA2985534624.66226083986734No Hit
GGTAACGC2985486824.661865983928255No Hit
CCACTTAT2598194521.462605213722426No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)