FastQCFastQC Report
Sat 11 May 2024
EGAF00005396712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences147792115
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGAACT4370841929.574256380321778No Hit
GCATTCGG3972562526.87939407322238No Hit
CAGCGGAA3310845622.40204492641573No Hit
ATTACTTC2991613720.242038622967133No Hit
CAGCGAAA2229000.1508199540956566No Hit
GCATTCGA2109240.14271668011517394No Hit
ATTACTTA1594450.1078846459433915No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)