FastQCFastQC Report
Wed 1 May 2024
EGAF00005396717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences212568149
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCGAT6755263031.779281288279932No Hit
ACCCGACG5447470925.62693858711636No Hit
TGATATTC5059971123.80399473676557No Hit
GTGATCGA3816589417.95466262445556No Hit
ACCCGACA3291710.1548543380316117No Hit
GTGATCAA2238540.1053092860116122No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)