FastQCFastQC Report
Wed 1 May 2024
EGAF00005396718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences239550874
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGCTCG7620465631.811470660716523No Hit
TGGTAAAC5970020824.92172414282237No Hit
GAAAGGGT5093939421.26454107614736No Hit
CTCCTCTA5013169920.927370525895057No Hit
GTCCTCTA3970690.16575560479900397No Hit
CGCCTCTA3012660.12576284735241666No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)