FastQCFastQC Report
Wed 8 May 2024
EGAF00005396722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91369671
Total Bases730.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCAGC2442110426.72780117595039No Hit
ACCCTCCT2250197624.62740179944393No Hit
CAATGGAG2150324023.534330117047265No Hit
TGGAATTA1965994521.516926552137853No Hit
CAAGGGAG7811950.8549828312285376No Hit
CACTGGAG7386150.8083809341942361No Hit
CCATGGAG4635330.5073160436355297No Hit
ACCCTCCA1498470.16400080941519424No Hit
TGCAATTA1359190.1487572391499582No Hit
TCGAATTA1296760.14192455612541277No Hit
CCCCTCCT922670.10098208627674712No Hit
GGGAATTA921100.1008102568301904No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)