FastQCFastQC Report
Wed 1 May 2024
EGAF00005396723

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396723
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences184582455
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAGCAC5446673529.50807811067417No Hit
GACCTATT4395350123.81239376190982No Hit
TTAGCTCG4259690923.07744200281657No Hit
ACTTAGGA4183559922.664992184658068No Hit
GACCTATA2852560.1545412319930407No Hit
TTAGCTCA2210130.11973673229126788No Hit
ACTTAGAA1914160.10370216389201238No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)