FastQCFastQC Report
Wed 8 May 2024
EGAF00005396725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103308907
Total Bases826.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGAGC3167504330.660515070593092No Hit
TGCTCGTA3071255429.72885387317088No Hit
ATGAATCT2514312924.337813389120456No Hit
GATCTCAG1489370614.41667173964003No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)