FastQCFastQC Report
Mon 6 May 2024
EGAF00005396727

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396727
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155597238
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGACGCG4624826029.723059737088647No Hit
GGTCGTAC4530414529.11629125447587No Hit
TCCTTCTT4107904926.4008857278045No Hit
AAAGAAGA2155718513.854477931028569No Hit
TCCTTCTA3549470.22811908782082624No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)