FastQCFastQC Report
Wed 1 May 2024
EGAF00005396729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences261228413
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGTCGG8712386233.35160253031128No Hit
GTATGTCA6018526623.039326124145614No Hit
ACGACATT5996474622.95490957945681No Hit
TGTCAGAC5187510919.858141924247725No Hit
CACGTCGA4255560.16290570964805426No Hit
ACGACATA2841550.10877645227665184No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)