FastQCFastQC Report
Thu 2 May 2024
EGAF00005396738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences337396191
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGATAC11865216335.167013192511114No Hit
ACGCGGGT8230899124.395352761999618No Hit
TTTACATG7338757321.75115634307798No Hit
GAATTCCA6050632317.933315376402692Illumina Small RNA Adapter 2 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)