FastQCFastQC Report
Mon 6 May 2024
EGAF00005396742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145835396
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTAGA3957309327.13545139617545No Hit
CAGTACTG3554701224.37474918640465No Hit
TTCCCGAC3544467624.304576921778303No Hit
AGTAGTCT3409595723.379754116757773No Hit
CAGTACTA1632590.11194744518676385No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)