FastQCFastQC Report
Sat 11 May 2024
EGAF00005396745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144297037
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT4677652932.41683264778333No Hit
TGTGCGGG4617606232.00070005595472No Hit
ACCATAAC3409903223.63113803923777No Hit
GTGTATTA1550804110.747303841034519No Hit
TGTGCGGA2901120.2010519453701603No Hit
CAACGCCA2245140.1555915524446978No Hit
GGGTATTA2056820.14254069541289333No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)