FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129206688
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCCAC3880448230.0328741496725No Hit
GGCAATGG3069392323.755676641134862No Hit
TTTGGGTA2933712522.705577748421195No Hit
ACATTACT2902262122.4621661999416No Hit
GTTGGGTA2402630.18595244852959933No Hit
GGCAATGA2046320.1583757026571256No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)