FastQCFastQC Report
Mon 6 May 2024
EGAF00005396749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166317590
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAAGGCC4999736330.061380158286326No Hit
GATGCCAA3997535124.03555210245651No Hit
CTCCTAGT3800051822.848165368437577No Hit
AGGTATTG3678772822.118964085518556No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)