FastQCFastQC Report
Wed 8 May 2024
EGAF00005396751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65849288
Total Bases526.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGGACAT1857092528.20216522310765No Hit
GATCTTGA1642286324.940076800830404No Hit
CGATCACC1638724624.885988137031944No Hit
TTCAGGTG1387982821.078174755663266No Hit
CGATCACA1179420.17910899811095907No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)