FastQCFastQC Report
Wed 1 May 2024
EGAF00005396757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences255276306
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACAGT7294303928.57415172718772No Hit
GGATGCCG6843398226.80780800706196No Hit
ATGCTGAA6034730623.639995009955996No Hit
TATGATTC5129256520.092959587091485No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)