FastQCFastQC Report
Mon 6 May 2024
EGAF00005396764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences152568295
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTCAT5931560938.87807030943093No Hit
CCAGGGCA4627515130.330778095147487No Hit
AATAATGG3177623020.827544805426317No Hit
GTGTCATC138703159.091217149670578No Hit
AATAATGA2136610.14004285752816467No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)