FastQCFastQC Report
Wed 8 May 2024
EGAF00005396767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13275082
Total Bases106.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACAGT371840828.01043338188043No Hit
GGATGCCG358683827.0193283928491No Hit
ATGCTGAA306325523.075224695410547No Hit
TATGATTC275551620.757054457366063No Hit
ATGCTAAA166310.12527982877996535No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)