FastQCFastQC Report
Thu 9 May 2024
EGAF00005396772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24065606
Total Bases192.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATGAC661319127.479844056285142No Hit
TGCCGTGG596656324.792905692879703No Hit
CTAGACCT575793823.926004605909363No Hit
ACTTCATA540091222.442451688106253No Hit
ATTTCATA433580.18016583500951525No Hit
ACTTAATA387780.1611345253470866No Hit
CTAGACCA348370.1447584573602676No Hit
TGCCGTGA326470.13565833330770893No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)