FastQCFastQC Report
Thu 2 May 2024
EGAF00005396776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences284556058
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTACGT7950096727.93859584602483No Hit
TCTATATC7075377224.864616306991433No Hit
CTAGCGAG6750345023.722373185251254No Hit
AGGCGTCA6423502922.573769629603177No Hit
TCTATATA3261490.11461678317177137No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)