FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38063077
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCCGAT1091171628.667456390874545No Hit
GAAGGCTG914477224.02530935688673No Hit
CCCTAACA882011723.17236990588018No Hit
TGGATTGC872420922.920398684530944No Hit
TGGATTGA636580.16724344172175046No Hit
GAAGGCTA404890.10637342850658132No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)