FastQCFastQC Report
Fri 3 May 2024
EGAF00005396785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences364169490
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATACGCC12691080434.84937851328512No Hit
AGCCAATT11732796332.217955161482635No Hit
CTAGGTGA11088234830.44800595458999RNA PCR Primer, Index 38 (100% over 8bp)
TCGTTCAG53950431.4814648530825578No Hit
GATACGCA5895900.16189988897751978No Hit
AGCCAATA5216450.14324236772278756No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)