FastQCFastQC Report
Wed 1 May 2024
EGAF00005396790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences205273471
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTCAT7338691835.750804837318704No Hit
CCAGGGCA6004567429.251550971240704No Hit
AATAATGG4345963121.17157701298869No Hit
GTGTCATC2657350612.945416604759414No Hit
AATAATGA3313640.16142563302785484No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)