FastQCFastQC Report
Wed 1 May 2024
EGAF00005396791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences205296849
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCCA6270984230.545934974384338No Hit
CGCTATGT5141466525.044059492603317No Hit
TTGAGATC4786247723.31379036411806No Hit
AAACCGAG4082061819.883704108873097No Hit
AACCCGAG6687580.32575171185408697No Hit
GTGAGATC2728340.13289731495099566No Hit
GCTGTCAA2168220.10561389571059612No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)