FastQCFastQC Report
Wed 8 May 2024
EGAF00005396794

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396794
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90204013
Total Bases721.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGTG2517928627.91370933796482No Hit
GCGTACAC2415530426.778524809090253No Hit
TACAGACT2019290822.385820018894282No Hit
CGACTTGA1992265722.086220266054017No Hit
CGACTTAA969740.10750519491854536No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)