FastQCFastQC Report
Wed 8 May 2024
EGAF00005396798

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396798
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43615229
Total Bases348.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTCAC1332794030.55799615313266No Hit
TGGTGTTT1109079025.428709774744046No Hit
GATCAGCA1058346824.265533490607147No Hit
ACAACAGG805025818.45744751219809No Hit
ACAACAGA1191330.2731454190003221No Hit
TGGTGTTA1126170.2582056831571376No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)