FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39889419
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1060533626.586839983806232No Hit
GGGCTCTC1040671226.088903425743055No Hit
ACAAGAAT938270523.521789073939633No Hit
CATTAGCG904204222.6677706185693No Hit
GGGCTCTA501810.1258002780135755No Hit
GGGGTCTC451500.1131879108091296No Hit
ACAAGAAA438680.10997402594407304No Hit
TTCGCTAA404330.10136271977288012No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)