FastQCFastQC Report
Fri 10 May 2024
EGAF00005396806

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396806
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34244511
Total Bases273.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTACGT974333528.452253267684274No Hit
TCTATATC817650823.876842627421368No Hit
CTAGCGAG810470723.667171068671415No Hit
AGGCGTCA787496522.99628398840328No Hit
CTCGCGAG369170.107804138304092No Hit
TCTATATA353720.10329246634592038No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)