FastQCFastQC Report
Thu 2 May 2024
EGAF00005396808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences346310380
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGGCT10991372031.738500012618736No Hit
AGAAACTC8114349523.430858468637293No Hit
GACTCAAA7818276622.575923366778667No Hit
TCTGTTGG7367039721.272939321079548No Hit
TCTGTTGA9696870.2800051791690448No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)