FastQCFastQC Report
Wed 8 May 2024
EGAF00005396810

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396810
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45997428
Total Bases367.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTGAT1483479832.2513641414907No Hit
GAGCAAGA1330173528.918432134944588No Hit
ATATCCCG1012869622.020135560623086No Hit
CGCAGTTC718005515.609688002555272No Hit
ATATCCCA940930.20456143765255744No Hit
CGCAGTTA609620.13253349730771902No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)