FastQCFastQC Report
Fri 10 May 2024
EGAF00005396817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27779433
Total Bases222.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCATGTG762767927.45800823220546No Hit
GAAGGAAC714187525.709218039115484No Hit
TTTCATGA701224925.24259224441334No Hit
ACGTCCCT568261120.456180657107005No Hit
CGCATGTA379300.13653986386259215No Hit
ACGTCCCA278750.1003440207004945No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)