FastQCFastQC Report
Wed 1 May 2024
EGAF00005396820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences230199464
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACGCGG7339122831.881580749466902No Hit
AGCACACT5933692225.776307628587702No Hit
CCTTTGTC5462081723.727603900936973No Hit
TAGGATAA4102913817.823298667628524No Hit
AGCACACA4023980.17480405601639457No Hit
GTACGCGA2444320.10618269728030297No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)