FastQCFastQC Report
Wed 8 May 2024
EGAF00005396822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22986246
Total Bases183.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTGCG644588428.042351935152876No Hit
GGACACGT616971926.84091608521026No Hit
TACTCTTC553238024.068218881847866No Hit
ATGAGAAA394065917.143551844002715No Hit
AGGAGAAA5956612.591380080070491No Hit
ATGAAAAA430190.18715104676074554No Hit
TACTCTTA272540.11856655497378737No Hit
TCCTCTTC270440.11765296516882313No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)