FastQCFastQC Report
Wed 8 May 2024
EGAF00005396826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24902356
Total Bases199.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAGACC683315227.43978119981901No Hit
ATCTCTGT655760926.333287500989865No Hit
TAGCTCTA596535223.95497036505301No Hit
GGAGAGAG456341918.325250028551515No Hit
GGAGCGAG7241392.907913612671829No Hit
CCTAGACA337640.13558556467508537No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)