FastQCFastQC Report
Fri 10 May 2024
EGAF00005396832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29396339
Total Bases235.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT944712632.13708346471307No Hit
ACAAGGTA674292022.937958362774356No Hit
GTGGTACC656887022.345877831930025No Hit
TACTATAG625333921.272509478136037No Hit
TCCTATAG452580.15395794694026355No Hit
TACTCTAG449160.15279453676187363No Hit
CGTCCCGA402310.13685717803159095No Hit
GTGGTACA297650.10125410514554212No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)