FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005396838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30429186
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGATGC830759127.301390842331436No Hit
CAGCCACT804359526.43381587663896No Hit
TGATTCTA660565521.708286905867283No Hit
ACTAGGAG610855020.07464149714685No Hit
ACTCGGAG7478952.4578212509529505No Hit
TGAATCTA2853220.9376589962018702No Hit
ACGAGGAG665440.21868478506128952No Hit
CAGCCACA439360.1443876941039435No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)