FastQCFastQC Report
Wed 8 May 2024
EGAF00005396844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33352243
Total Bases266.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTCCCA1019348030.563101857947007No Hit
ACAGAGGT831529824.931750467277418No Hit
GTCCTAAC767814623.021378202359582No Hit
TATAGTTG681684820.438949188514847No Hit
CGGTCCAA625330.18749263730178506No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)