FastQCFastQC Report
Wed 8 May 2024
EGAF00005396850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42648491
Total Bases341.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCTCG1150269926.970940191060922No Hit
AATCTCTC1128876226.469311657474588No Hit
CGGAGGGA1128845226.468584785332734No Hit
TCAGAAAT778460418.25294123536516No Hit
ACTCTCTC1598930.3749089270239362No Hit
CATCTCTC1221190.28633838416463553No Hit
GTCTCTCA764140.1791716382181025No Hit
AATCTCTA535310.12551675040507296No Hit
CGGAGGAA489930.11487628014787206No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)