FastQCFastQC Report
Fri 10 May 2024
EGAF00005396853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52345370
Total Bases418.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTTAT1468567228.05534090216575No Hit
TAGACACC1433183027.379365166393892No Hit
ATTTGCTA1174248622.43271181386243No Hit
CCACAGGG1080780620.647109763480515No Hit
CCACAGGA2553310.48778144084185476No Hit
TAGACACA695510.13286944002879336No Hit
GGCGGTAT649250.12403198219823454No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)