FastQCFastQC Report
Thu 9 May 2024
EGAF00005396856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46810407
Total Bases374.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGCCTT1693343436.17450709198064No Hit
TCTCGGGC1300862827.790033955483445No Hit
GTATATAG836495717.86986598941556No Hit
AGGATACA792525916.930549225944564No Hit
CACGCCTA1396650.2983631396326035No Hit
GTATCTAG611700.13067606953299934No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)