FastQCFastQC Report
Thu 9 May 2024
EGAF00005396862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47093423
Total Bases376.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGAAAT1261672026.79083234191747No Hit
TAGTGCGG1165205224.742418914845075No Hit
ACACCTTC1129034323.974352002401695No Hit
GGTATGCA1087778023.09829973497573No Hit
TAGTGCGA1676120.3559138183690746No Hit
ACACCTTA717560.15236947205982457No Hit
GGTACGCA599320.12726193209612308No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)