FastQCFastQC Report
Wed 8 May 2024
EGAF00005396868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45388353
Total Bases363.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGATG1333446929.378613936487184No Hit
GCATCTCC1149139325.31793343547848No Hit
AACGTCAA1059165723.335627534226678No Hit
TGTAAGGT954201721.023051882935697No Hit
GCATCTCA829610.18278037099076935No Hit
GCCTCTCC534600.11778352036699812No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)