FastQCFastQC Report
Thu 9 May 2024
EGAF00005396871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33328499
Total Bases266.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTACCTG860490425.818456450739053No Hit
TGCTGTAA833766725.016629161727327No Hit
AAAGTGCT821428924.646441473406888No Hit
CTGCAAGC783346623.503806757093983No Hit
TGCTCTAA862420.25876352847453465No Hit
GCTACCTA388440.11654890308741477No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)