FastQCFastQC Report
Thu 9 May 2024
EGAF00005396877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31971267
Total Bases255.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGTTGTC823129725.74592054797203No Hit
ATTGGCGT805434025.19243294299222Illumina PCR Primer Index 6 (100% over 8bp)
GCAACAAA767435424.0039095103738No Hit
CGCCATCG767429924.003737480907468No Hit
CGCCATCA827180.2587260617478813No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)