FastQCFastQC Report
Wed 8 May 2024
EGAF00005396880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23078920
Total Bases184.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGAGT633786427.461700980808462No Hit
CCTACGTA591774225.641329836924776No Hit
GAGCACCG574083224.87478616850355No Hit
ATAGTTAC486828321.09406766001182No Hit
GAGCACCA302640.13113265265445698No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)